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  1. DeeDeeExperiment::clusterPro_res
    'clusterPro_res'
    rda| rds
    list
  2. DeeDeeExperiment::de_limma
    A sample 'MArrayLM' object
    json| rda| rds
    MArrayLM
  3. DeeDeeExperiment::de_named_list
    de_named_list
    rda| rds
    list
  4. DeeDeeExperiment::dge_exact_IFNg_both
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  5. DeeDeeExperiment::dge_exact_IFNg_naive
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  6. DeeDeeExperiment::dge_exact_Salm_both
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  7. DeeDeeExperiment::dge_exact_Salm_naive
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  8. DeeDeeExperiment::dge_lrt_IFNg_both
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  9. DeeDeeExperiment::dge_lrt_IFNg_naive
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  10. DeeDeeExperiment::dge_lrt_Salm_both
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  11. DeeDeeExperiment::dge_lrt_Salm_naive
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  12. DeeDeeExperiment::enrichr_res
    'enrichr_res'
    csv| json| rda| rds
    list
  13. DeeDeeExperiment::fgseaRes
    'fgseaRes'
    csv| xlsx| json| ndjson| rda| rds
    data.table|4576 x 8
  14. DeeDeeExperiment::gost_res
    'gost_res'
    json| rda| rds
    list
  15. DeeDeeExperiment::gsea_res
    'gsea_res'
    rda| rds
    gseaResult
  16. DeeDeeExperiment::IFNg_both
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  17. DeeDeeExperiment::IFNg_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  18. DeeDeeExperiment::muscat_res
    'muscat_res'
    rda| rds
    list
  19. DeeDeeExperiment::Salm_both
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  20. DeeDeeExperiment::Salm_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  21. DeeDeeExperiment::topGO_results_list
    'topGO_results_list'
    csv| json| rda| rds
    list
  22. EMMA::de_res_IFNg_vs_naive
    A sample 'data.frame' containing Differential Expression Analysis, generated with 'DESeq2'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 6
  23. EMMA::fea_res
    A sample 'list' containing Functional Enrichment Analysis results, generated with 'gprofiler2'
    json| rda| rds
    list
  24. EMMA::gene_universe
    A sample character vector containing the background gene list used to perform FEA on the 'macrophage' dataset
    json| rda| rds
    character